After announcing the release of the Scene Expansion over on the Playstation Blog, Brandon Laurino (the Online Director for Konami) responded to the numerous comments gamers made requesting the release of a patch for MGS4 that would include trophies into the game. Brandon had this to say in a reply post;
"On the subject of MGS4/MGO trophies and Konami ID - we hear you. We have been circulating these issues internally, and we will report back as soon as we are able."
He makes a few other nods regarding cheaters and the moderation of the Metal Gear Online servers, so it seems like the word is finally starting to reach the upper-tiers of Konami. Only time will tell if they decide to take action.